Publications

Jessica M. Oakes*, Israel Amirav, Josué Sznitman. Pediatric inhalation therapy and the aerodynamic rationale for age-based aerosol sizes. Expert Opinion in Drug Delivery.  Link
 

Kamran Poorbahrami+, Michael Allshouse, Jessica M. Oakes*#. Dosimetry sensitivity in a lower dimensional model of patient specific asthma subjects. IEEE Transactions in Biomedical Engineering. Link
 

Priya Garg, Siyan Wang, Jessica M. Oakes*, Chiara Bellini, Michael J. Gollner. The effectiveness of filter material for respiratory protection worn by wildland firefighters. Fire Safety Journal. 2023, 139: 103811.  Link
 

Matthew Eden+, Jacqueline Matz+, Mireia Perera Gonzalez+, Priya Garg, Katherine McElderry, Michael J. Gollner, Jessica M. Oakes*^, Chiara Bellini^. Prolonged smoldering douglas fir smoke augments respiratory resistances, stiffens the aorta, and curbs ejection fraction in hypercholesterolemic mice.  ^corresponding authors contributed equally. Science of the Total Environment. 2023, 861: 160609.  Link
 

Jacqueline Matz+, Yasmeen M. Farra, Héctor Millán Cotto+, Chiara Bellini, Jessica M. Oakes*#. Respiratory Mechanics Following Chronic Cigarette Smoke Inhalation in the Apoe−/− Mouse Model. Biomechanics and Modeling in Mechanobiology. 2023, 22: 233-252.  Link
 

Matthew Eden+, Yasmeen M. Farra, Jacqueline Matz+, Chiara Bellini, Jessica M. Oakes*#. Pharmacological and Physiological Response in Apoe−/− Mice Exposed to Cigarette Smoke or E-cigarette Aerosols. Inhalation Toxicology. 2022, 34: 260-274. Link
 

Priya Garg, Thomas Roche, Matthew Eden+, Jacqueline Matz+, Jessica M. Oakes*, Chiara Bellini, Michael J. Gollner. Effect of moisture content and fuel type on emissions from vegetation using a steady state combustion apparatus. International Journal of Wildland Fire. 2021, 31(1) 14-23. Link
 

Adam Schuller, Chiara Bellini, Timothy G. Jenkins, Matthew Eden+, Jacqueline Matz+, Jessica M. Oakes*, Luke Montrose. Simulated wildfire smoke significantly alters sperm DNA methylation patterns in a murine model. Toxics. 2021, 9(9) 199. Link
 

Kamran Poorbahrami+, Irene E. Vignon-Clementel, Shawn C. Shadden, Jessica M. Oakes*#. A Whole Lung In Silico Model to Estimate Age Dependent Particle Dosimetry. Scientific Reports. 2021, 11(1) 1-12. Link
 

Yasmeen M. Farra, Jacqueline Matz+, Bhama Ramkhelawon, Jessica M. Oakes*, Chiara Bellini. Structural and functional remodeling of the female Apoe−/− mouse aorta due to chronic cigarette smoke exposure. American Journal of Physiology - Heart and Circulatory Physiology. 2021, 320: H2270-H2282. Link
 

Ludovic Boytard, Dr. Tarik Hadi, Dr. Michele Silvestro, Hengdong Qu, Andrew Kumpfbeck, Rayan Sleiman, Kissinger Hyppolite Fils, Dr. Dornazsadat Alebrahim, Francesco Boccalatte, Dr. Matthias Kugler, Annanina Corsica, Bruce Gelb, Glenn Jacobowitz, Dr. George Miller, Chiara Bellini, Jessica M. Oakes*, Dr. Jean-Sébastien Silvestre, Dr. Lior Zangi. Lung-derived HMGB1 is detrimental for vascular remodeling of metabolically imbalanced arterial macrophages. Nature Communications. 2020, 11:1-17. Link
 

Amy V. Mueller, Matthew J. Eden+, Jessica M. Oakes*, Chiara Bellini, Loretta A. Fernandez. Quantitative Method for Comparative Assessment of Particle Filtration Efficiency of Fabric Masks as Alternatives to Standard Surgical Masks for PPE. Matter: Cell Press. 2020, 3:950-962. Link
 

Kimberly A. Stevens Boster, Melody Dong, Jessica M. Oakes*, Chiara Bellini, Vitaliy L. Rayz, John F. LaDisa Jr.,Dave Parker, Nathan M. Wilson, Shawn C. Shadden, Alison L. Marsden, Craig J. Goergen . Integrated Image-Based Computational Fluid Dynamics Modeling Software as an Instructional Tool. Journal of Biomechanical Engineering. 2020, 142: 111008. Link
 

Yasmeen Farra, Matthew J. Eden+, James Coleman, Praveen Kulkarni, Craig Ferris, Jessica M. Oakes*, Chiara Bellini. Acute Neurological, Behavioral, and Physiological Effects of Nose-Only Exposure to Vaporized Cannabis in C57BL/6 Mice. Inhalation Toxicology. 2020, 32: 200-217. Link
 

Ali Farghadan, Kamran Poorbahrami+, Sahar Jalal, Jessica M. Oakes*, Filippo Coletti, Amirhossein Arzani. Particle transport and deposition correlation with near-wall flow characteristic under inspiratory airflow in lung airways. Computers in Biology and Medicine. 2020, 120: 103703. Link
 

Kamran Poorbahrami+, David G. Mummy, Sean Fain, Jessica M. Oakes*#. Patient-Specific Modeling of Aerosol Delivery in Healthy and Asthmatic Adults. Journal of Applied Physiology. 2019, 127: 1720-1732. Link
 

Jessica M. Oakes*#, David G. Mummy, Kamran Poorbahrami+, Wei Zha, Sean Fain. Patient-Specific Computational Simulations of Hyperpolarized 3He MRI Ventilation Defects in Healthy and Asthmatic Subjects. IEEE Transactions of Biomedical Engineering. 2019, 66: 1318-1327, 2019. Link
 

Kamran Poorbahrami+, Jessica M. Oakes*#. Regional Flow and Deposition Variability in Adult Female Lungs: A Numerical Simulation Pilot Study. Clinical Biomechanics. 2019, 66: 40-49. Link
 

Jessica M. Oakes*#, Steven C. Roth, Shawn C. Shadden. Airflow Simulations in Infant, Child, and Adult Pulmonary Conducting Airways. Annals of Biomedical Engineering. 2018, 46: 498-512. Link
 

Jessica M. Oakes*, Shawn C. Shadden, Celine Grandmont, Irene E. Vignon-Clementel. Aerosol Transport Throughout Inspiration and Expiration in the Pulmonary Airways. International Journal of Numerical Methods in Biomedical Engineering. 2017, 33: e2847. Link
 

Jessica M. Oakes, Philipp Hofemeier, Irene E. Vignon-Clementel, Josue Sznitman. Aerosols in Healthy and Emphysematous In Silico Rat Acinar Models. Journal of Biomechanics. 2016, 49: 2213-2220. Link
 

Jessica M. Oakes, Alison L. Marsden, Celine Grandmont, Chantal Darquenne, Irene E. Vignon-Clementel. Distribution of Aerosolized Particles in Healthy and Emphysematous Rat Lungs: Comparison Between Experimental and Numerical Studies. Journal of Biomechanics. 2015, 48: 1147-1157. Link
 

Chantal Darquenne, Maria G. Borja, Jessica M. Oakes, Ellen C. Breen, I. Mark Olfert, Miriam Scadeng, G. Kim Prisk. Increase in Relative Deposition of Fine Particles in the Rat Lung Periphery in the Absence of Gravity. Journal of Applied Physiology. 2014, 117: 880-886. Link
 

Jessica M. Oakes, Ellen Breen, Miriam Scadeng, Ghislain S. Tchantchou, Chantal Darquenne. MRI-Based Measurements of Aerosol Deposition in the Lung of Healthy and Elastase-Treated Rats. Journal of Applied Physiology. 2014, 116: 1561-1568. Link
 

Jessica M. Oakes, Alison L. Marsden, Celine Grandmont, Shawn C. Shadden, Chantal Darquenne, Irene E. Vignon-Clementel. Airflow and Particle Deposition Simulations in Health and Emphysema: From In Vivo to In Silico Animal Experiments. Annals of Biomedical Engineering. 2014, 42: 899-914. Link
 

Jessica M. Oakes, Miriam Scadeng, Ellen C. Breen, G. Kim Prisk, Chantal Darquenne. Regional Distribution of Aerosol Deposition in Rat Lungs Using Magnetic Resonance Imaging. Annals of Biomedical Engineering. 2013, 41: 967-978. Link
 

Jessica M. Oakes, Miriam Scadeng, Ellen C. Breen, Alison L. Marsden, Chantal Darquenne. Rat Airway Morphometry Measured from In Situ MRI-Based Geometric Models. Journal of Applied Physiology. 2012, 112: 1921-1931. Link
 

Jessica M. Oakes, Steven Day, Steven J. Weinstein, Risa J. Robinson. Flow Field Analysis in Expanding Healthy and Emphysematous Alveolar Models Using Particle Image Velocimetry. Journal of Biomechanical Engineering. 2010, 132(2): 021008-1–9. Link